JDotter

Java-based dot matrix viewer

JDotter, also known as Java Dot Plot Alignments is a platform-independent Java-based interactive tool for the Linux version of Dotter that is a widely used program created in order to generate dotplots of large DNA or protein sequences.

JDotter runs as a client-server application and can send new sequences to the Dotter program for alignment as well as rapidly access a repository of preprocessed dotplots.

JDotter can also interface with a sequence database or a file system in order to show supplementary feature data.

Thus, JDotter greatly simplifies access to dotplot data in laboratories that deal with large numbers of genomes and have a multi-platform organization.

Here are some key features of "JDotter":

· create whole-genome, sub-genome or protein dot plots from user-supplied sequences;
· quickly load pre-calculated plots of complete genomes from VOCs database;
· view and navigate the plots to pinpoint insertions/deletions and evaluate overall genome similarity;
· print/save dot plots in JDotter or JPEG format.

Requirements:

· Java

Program Information

 Developer: Viral Bioinformatics.for
more visit free software

Size,Price and Added Date

2KB.Freeware.$0.00 to buy
13-08-2011

Download Links

JDotter.
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